About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1062093_1062858_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
1062093 - 1062858

Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCC|GTAAGAATT

5'SS Class:
major

3'SS Sequence:
CGCTTTTGATCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTGTCAC

U12 Branch Point Sequence:
TCGCTTTTGATC

Flanking Amino Acid:
MEKPARSKHCRFCNVCVHRF

Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69
0.45
1.3
75.8
40

Major BPS
74.9
0.62
1.1
77.4
37.4

Major PPT
69.3
0.44
1
69.3
40.6

Minor 5ss
41.3
-1
3.2
63.2
41.1

Minor BPS
53.3
0.09
1.2
57.4
36.3

Associated Gene:

Gene:
ZDHHC4

Ensembl Gene ID:

Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1061744 - 1063878
2135