About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10624848_10625294_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10624848 - 10625294
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAACATATAAAA
Flanking Amino Acid:
AVQRICPFGSRQQQKLLKIL
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
73.7
0.53
1
69.7
45.4
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
44.8
-0.3
1.8
54.89
36.4

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041615
10576047 - 10645149
69103
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003548
10576981 - 10652516
75536
ENSAPLT00000003542
10578730 - 10645149
66420