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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10629335_10633319_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10629335 - 10633319
Intron Length:
3985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TATTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTCCTTATTA
Flanking Amino Acid:
TVLEYKQDQSKMKPVRVLSA
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.7
38.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.8
0.76
0.8
77.8
35.9
Minor 5ss
40.6
-1
3
55.4
36.8
Minor BPS
73
0.72
1.5
80.17
35.9

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003548
10576981 - 10652516
75536
ENSAPLT00000003542
10578730 - 10645149
66420
ENSAPLT00000041615
10576047 - 10645149
69103