About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1063104_1063593_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1063104 - 1063593
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AACTCTGTAACC
Flanking Amino Acid:
QAVEIRFLIQHLFLTFPRIV
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
55.3
0.15
2
65.46
40.4

Associated Gene:

Gene:
ZDHHC4
Ensembl Gene ID:
ENSAPLG00000009220
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009603
1061744 - 1063878
2135