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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10638014_10642375_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10638014 - 10642375
Intron Length:
4362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CATCTTCTAATT
Flanking Amino Acid:
KNETQTARTNAVQLKASELQ
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75.4
0.57
0.8
74
36
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
49.8
0.07
1.6
66.52
38.6

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003542
10578730 - 10645149
66420
ENSAPLT00000041615
10576047 - 10645149
69103