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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10642546_10645072_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10642546 - 10645072
Intron Length:
2527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCCTTTCTACTT
Flanking Amino Acid:
EYLVSLQQRNRLLRHLKRKD
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
69.9
34.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.4
0.77
0.7
82
28.3
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
46.4
-0.1
1.9
62.82
42.7

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041615
10576047 - 10645149
69103
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003542
10578730 - 10645149
66420