About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10646647_10646816_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10646647 - 10646816
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCTAATGAACT
Flanking Amino Acid:
PCYTYTEAVEKWGEKLVIVA
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.2
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.79
0.6
84.5
23.4
Minor 5ss
28.3
-2.5
3.1
31.3
36.6
Minor BPS
49.6
0.05
2
71.17
45.1

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301