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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10646994_10647966_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10646994 - 10647966
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATACATATCT
Flanking Amino Acid:
LQRDLHSGAFKVDAGKIHYH
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.8
0.83
0.7
85.1
29
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
53.1
0.18
2.1
79.36
41.9

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301