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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10648111_10648652_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10648111 - 10648652
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
CTTTTCTCGATT
Flanking Amino Acid:
LLLLTRFHVDRRSKYDILME
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
73.7
0.53
0.9
75.2
34.5
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
62.2
0.46
1.6
78.41
38.5

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301