Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10649541_10653313_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10649541 - 10653313

Intron Length:

3773

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCATGTTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

TTTTGTTTAGGT

Flanking Amino Acid:

PNGGPYKTKKGTDVMVRCLK

Intron Amino Acid Position:

325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.4

34.2

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

73.3

0.52

0.9

68.1

37.5

Minor 5ss

34.4

-1.8

2.8

42.8

Minor BPS

51.6

0.13

2.2

79.24

43.5

Associated Gene:

Gene:

GTF3C1

Ensembl Gene ID:

ENSAPLG00000003641

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003785

10646028 - 10688328

42301