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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10655063_10656641_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10655063 - 10656641
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AATGTTCCAATT
Flanking Amino Acid:
RLLERYKVVKGFMEDEGRQR
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81.7
0.71
0.7
81.2
30
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
44.1
-0.3
1.8
59.77
38.1

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301