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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10656967_10657967_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10656967 - 10657967
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATCAT
5'SS Class:
major
3'SS Sequence:
GTTCTTAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTGTTCTTAAAC
Flanking Amino Acid:
DGTQQSTPVKGLKPTAVKSV
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
71.2
40.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
67.2
0.39
1.1
60.5
43.9
Minor 5ss
33.8
-1.8
3.4
49
47.2
Minor BPS
74.9
0.76
1.3
79.2
36

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301