Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10658180_10658793_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10658180 - 10658793

Intron Length:

614

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

TTTGCACTAGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TCATATTAAATA

Flanking Amino Acid:

VEEVRLEDPKICDQKKEKRS

Intron Amino Acid Position:

596

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

74.4

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

61.3

0.26

1.1

62.4

37.8

Minor 5ss

32.2

-2

40.3

45.3

Minor BPS

49.5

-0

1.8

60.45

40.2

Associated Gene:

Gene:

GTF3C1

Ensembl Gene ID:

ENSAPLG00000003641

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003785

10646028 - 10688328

42301