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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10660764_10661735_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10660764 - 10661735
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
CTGCTTTTAACA
Flanking Amino Acid:
TVIQDGISKKVEFVVHPSVS
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
75.1
34.9
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
76.4
0.6
0.9
72.6
36.4
Minor 5ss
28.8
-2.4
3.3
41.4
45.1
Minor BPS
65
0.47
1.3
67.7
39.3

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301