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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10665070_10665490_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10665070 - 10665490
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTGC
5'SS Class:
major
3'SS Sequence:
TAAATAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAACT
Flanking Amino Acid:
FVQIVQVSYKVDGLEEFLND
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.8
40
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
63
0.29
1
53
45.4
Minor 5ss
42.5
-0.8
3.2
58.8
46.1
Minor BPS
70.9
0.73
2
93.33
34.8

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301