About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10667780_10668542_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10667780 - 10668542
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGGTAT
5'SS Class:
major
3'SS Sequence:
TTTGTATGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AACTTCTCAACA
Flanking Amino Acid:
LQCVCLNTPLGVVRYPRSKR
Intron Amino Acid Position:
1054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
68.3
39.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.7
0.53
1
66.7
44.2
Minor 5ss
44
-0.6
3.2
55.1
49.1
Minor BPS
61.7
0.36
1.5
66.97
39.3

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301