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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10668679_10669984_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10668679 - 10669984
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
CTCTTTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATTTTTTTACTC
Flanking Amino Acid:
ERKCAMLEYTTGSREVVDNG
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
65.3
46
Major BPS
78.6
0.71
1
78.6
31
Major PPT
80.9
0.7
0.7
80.5
24.8
Minor 5ss
45.3
-0.5
2.7
57.6
40.4
Minor BPS
62.5
0.37
1.5
71.5
34.3

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301