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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1066906_1067535_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1066906 - 1067535
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ATAATCTAAAAA
Flanking Amino Acid:
VADTQEYIIETATEDMETSE
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
77.3
0.61
1
75.7
38.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
49.1
-0
1.8
60.49
38.9

Associated Gene:

Gene:
E4F1
Ensembl Gene ID:
ENSAPLG00000005530
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017091
1065844 - 1073423
7580