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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10670121_10670336_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10670121 - 10670336
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAA
U12 Branch Point Sequence:
CTTGTTTGAAAA
Flanking Amino Acid:
TSYIINKTSKENTASENGLT
Intron Amino Acid Position:
1145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
86.4
29.1
Major BPS
65.4
0.38
1.4
75.9
36.3
Major PPT
76.3
0.59
0.9
73.5
37.1
Minor 5ss
36.7
-1.5
2.7
46.1
42.1
Minor BPS
49
-0
1.6
60.4
40

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301