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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10670419_10671621_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10670419 - 10671621
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TATGTCATCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ACTTCTGTAAAT
Flanking Amino Acid:
TKHPLPLSTGGNKINILGEA
Intron Amino Acid Position:
1172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
69
0.43
0.9
63.4
37.8
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
54.7
0.23
2.1
75.14
41.9

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301