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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10673810_10675112_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10673810 - 10675112
Intron Length:
1303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAGG
5'SS Class:
major
3'SS Sequence:
GTATCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGTCTTCAATT
Flanking Amino Acid:
VRNPQTYLNYKVCLAEVYQD
Intron Amino Acid Position:
1334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
69.2
41.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
75.7
0.58
1
69.3
41.5
Minor 5ss
34.6
-1.8
2.9
41
39.2
Minor BPS
65.9
0.58
1.5
78.35
38.5

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301