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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10676670_10677803_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10676670 - 10677803
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TCATCATAAATA
Flanking Amino Acid:
NQNTKEDSLSSVYDIHFLVL
Intron Amino Acid Position:
1420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
52.6
0.08
1.9
65.11
41.6

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301