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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10677898_10678729_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10677898 - 10678729
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
GTGTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTCTTTTACAT
Flanking Amino Acid:
NQMKSCQSFQTFRLYREYRD
Intron Amino Acid Position:
1452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.5
0.8
0.8
80.6
37
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
51.3
0.12
1.7
70.85
40

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301