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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10678903_10679540_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10678903 - 10679540
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
GTTTTCTTGTTT
Flanking Amino Acid:
MSYQLSQSYYRVFTWRFPST
Intron Amino Acid Position:
1509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
86
0.81
0.8
80.2
37.3
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
46.8
-0.1
3.4
78.89
37.8

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301