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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10679826_10680917_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10679826 - 10680917
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
AAGGCAACAAAC
Flanking Amino Acid:
STMVENEVIKSLGKEGLEDE
Intron Amino Acid Position:
1604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
74.3
0.55
0.9
69.6
36.8
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
37.2
-0.9
1.9
42.25
37.3

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301