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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10681172_10682459_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10681172 - 10682459
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTCA
5'SS Class:
major
3'SS Sequence:
ATTTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
TPVPGRLSSPVSSVLDNTAV
Intron Amino Acid Position:
1689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
69.7
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.8
0.76
0.8
77.6
36.1
Minor 5ss
35.4
-1.7
2.9
42.3
44.4
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301