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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10682747_10683248_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10682747 - 10683248
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGTTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
RTRNLQQYLQDLIEMQQVLE
Intron Amino Acid Position:
1785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
69.1
33.3
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
90.2
0.9
0.6
87.8
22.4
Minor 5ss
32.7
-2
3.1
40
46.1
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301