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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10683910_10686030_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10683910 - 10686030
Intron Length:
2121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
ATTAACTTAAAA
Flanking Amino Acid:
HLQENPEVSKDCSMTDLSQA
Intron Amino Acid Position:
2005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74.4
41.9
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
41.2
-1
2.5
51.1
45.4
Minor BPS
62.9
0.4
1.6
73.59
37.1

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301