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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1068613_1070861_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1068613 - 1070861
Intron Length:
2249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATTTTTG
5'SS Class:
weak_major
3'SS Sequence:
TTTGGAGGATAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACGCAT
U12 Branch Point Sequence:
ACTTCCGTACGC
Flanking Amino Acid:
EYPPCILCKEPYVCQYCSRG
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
67
39
Major BPS
62.2
0.3
1.3
71.6
36.4
Major PPT
48.7
-0
1.2
50.5
46.5
Minor 5ss
56
0.2
2.3
66.7
38.7
Minor BPS
45.1
-0.3
2.4
59.86
45.6

Associated Gene:

Gene:
E4F1
Ensembl Gene ID:
ENSAPLG00000005530
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017091
1065844 - 1073423
7580