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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10687259_10687936_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10687259 - 10687936
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTAAGCTAAAAT
Flanking Amino Acid:
QPVAVLEILQGLEALGCIRR
Intron Amino Acid Position:
2083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
79.5
0.66
0.9
73.7
35.9
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
47.9
-0
2.2
70.96
45.3

Associated Gene:

Gene:
GTF3C1
Ensembl Gene ID:
ENSAPLG00000003641
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003785
10646028 - 10688328
42301