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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10689533_10689633_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10689533 - 10689633
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
CGTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAC
U12 Branch Point Sequence:
TGACCCGAGGCC
Flanking Amino Acid:
GPAALRPPPAGDAGGDRLAG
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
69.1
0.43
0.8
61.9
28.8
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
30
-1.5
3.6
48.5
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018296
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037251
10688981 - 10692112
3132