About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10689725_10689999_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10689725 - 10689999
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGCGTCAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAA
U12 Branch Point Sequence:
TCCCGCTGAACC
Flanking Amino Acid:
AGLQGGRRDHAKYIWRTYHL
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.2
0.08
1.4
46.9
45
Major BPS
54.6
0.12
1.1
46.7
38.9
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
28
-2.5
2.9
26.9
36.8
Minor BPS
49.4
-0
1.9
60.44
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018296
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037251
10688981 - 10692112
3132