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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10690075_10691115_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10690075 - 10691115
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
CCTCTCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TGGCATGTAACA
Flanking Amino Acid:
KLADDRKKLREYGIRNRDEV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
38.7
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
78
0.63
0.9
76
32.5
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
45.9
-0.3
2.1
58.37
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018296
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037251
10688981 - 10692112
3132