About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10691179_10691674_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
10691179 - 10691674
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTTAACTAATG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.9
0.63
0.9
71.2
38.5
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
46.8
-0.3
2.1
59.59
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018296
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037251
10688981 - 10692112
3132