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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10693927_10694741_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10693927 - 10694741
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TACTTCTTAATG
Flanking Amino Acid:
SAIFLPYRAEVGPAGSQFGI
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
72.2
39.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
31.9
-2.1
3.2
43.3
44.4
Minor BPS
71.3
0.53
1.3
67.77
40.4

Associated Gene:

Gene:
RHBDF1
Ensembl Gene ID:
ENSAPLG00000004575
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004755
10693507 - 10712874
19368