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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10694896_10695162_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10694896 - 10695162
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAACACA
5'SS Class:
major
3'SS Sequence:
CTGATTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTACTCTGATT
Flanking Amino Acid:
RLWLSLFLHAGILHCLVSVC
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
64.9
41.1
Major BPS
79
0.72
1
69
38.9
Major PPT
72
0.5
1.1
68.7
41.9
Minor 5ss
38.6
-1.3
2.9
41.3
45
Minor BPS
53
0.18
1.7
73.27
37.6

Associated Gene:

Gene:
RHBDF1
Ensembl Gene ID:
ENSAPLG00000004575
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004755
10693507 - 10712874
19368