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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10696926_10697386_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10696926 - 10697386
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TGTCATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTAACTGAAGC
Flanking Amino Acid:
EWPDDITKWPICTKNSAGNY
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
72.6
38.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
81.9
0.72
0.9
73.1
41.8
Minor 5ss
39
-1.2
3
52.9
44.1
Minor BPS
47.8
-0.1
2
61.1
43.7

Associated Gene:

Gene:
RHBDF1
Ensembl Gene ID:
ENSAPLG00000004575
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004755
10693507 - 10712874
19368