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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10697451_10698209_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10697451 - 10698209
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TGTGGGTGATCT
Flanking Amino Acid:
QFGSVCHQDPRVCEQPASME
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
72.3
0.5
0.9
65.1
36.3
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
38.5
-0.7
2.5
61.15
48.2

Associated Gene:

Gene:
RHBDF1
Ensembl Gene ID:
ENSAPLG00000004575
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004755
10693507 - 10712874
19368