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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10698311_10698423_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10698311 - 10698423
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CCCTCTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAG
U12 Branch Point Sequence:
TTCACAGTGACA
Flanking Amino Acid:
CVQTSEEECSSTLAVWVKWP
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
66.3
39.5
Major BPS
53.7
0.09
1.5
69
38.9
Major PPT
78.6
0.64
0.7
72.5
25.7
Minor 5ss
33
-1.9
3.3
45.7
43.5
Minor BPS
46.5
-0.2
2.3
64.35
41.9

Associated Gene:

Gene:
RHBDF1
Ensembl Gene ID:
ENSAPLG00000004575
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004755
10693507 - 10712874
19368