About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10698586_10699171_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10698586 - 10699171
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTCAGGAGC
5'SS Class:
weak_major
3'SS Sequence:
ATCTCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTGAGCTGAACT
Flanking Amino Acid:
HGRELQDFASEALIHLGAKF
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.4
52.7
41.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
72.4
0.5
1
65.9
40.3
Minor 5ss
30.9
-2.2
3.1
44.9
42.8
Minor BPS
56.9
0.29
2
77.76
44.2

Associated Gene:

Gene:
RHBDF1
Ensembl Gene ID:
ENSAPLG00000004575
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004755
10693507 - 10712874
19368