About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10702984_10703146_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10702984 - 10703146
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
TGTCTTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTGATGGGACT
Flanking Amino Acid:
DELDTSFFAREGVLHEELST
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
60.3
39.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.4
0.57
1
68.7
42
Minor 5ss
24.9
-2.9
3.1
24.4
37.1
Minor BPS
40.2
-0.6
2.2
59.97
44

Associated Gene:

Gene:
RHBDF1
Ensembl Gene ID:
ENSAPLG00000004575
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004755
10693507 - 10712874
19368