About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10704212_10705640_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10704212 - 10705640
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
AGGTGACTAATG
Flanking Amino Acid:
VGPCQLGMQKIIDPLARGRA
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
67.2
0.39
1
64.4
36.6
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
40.5
-0.8
2.2
44.45
41.5

Associated Gene:

Gene:
RHBDF1
Ensembl Gene ID:
ENSAPLG00000004575
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004755
10693507 - 10712874
19368