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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1071543_1071814_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1071543 - 1071814
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTCTTATTC
Flanking Amino Acid:
SLIRHHRRHTDERPYKCKKC
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
76.9
31.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84
0.77
0.8
77
36.2
Minor 5ss
34.2
-1.8
3.5
44.1
44.7
Minor BPS
60.9
0.32
1.6
67.5
38.3

Associated Gene:

Gene:
E4F1
Ensembl Gene ID:
ENSAPLG00000005530
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005759
1067479 - 1073423
5945
ENSAPLT00000017091
1065844 - 1073423
7580