About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10756567_10757063_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10756567 - 10757063
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCCTCTTTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
77.6
33.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.9
0.63
0.9
75
33.4
Minor 5ss
38
-1.4
3.3
48.1
47.5
Minor BPS
72.6
0.71
1.2
73.69
38.7

Associated Gene:

Gene:
MPG
Ensembl Gene ID:
ENSAPLG00000005267
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005440
10756522 - 10767799
11278