Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10761400_10767404_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10761400 - 10767404

Intron Length:

6005

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCCGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

CCTGTACTAACA

Flanking Amino Acid:

IYFCVNVSSQGEGAAVLLRS

Intron Amino Acid Position:

143

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

38.1

Major BPS

76.8

0.67

0.9

75.9

Major PPT

73.8

0.54

0.9

68.9

37.2

Minor 5ss

43.2

-0.7

2.9

56.2

47.9

Minor BPS

45.4

-0.3

56.2

43.1

Associated Gene:

Gene:

MPG

Ensembl Gene ID:

ENSAPLG00000005267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005440

10756522 - 10767799

11278