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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10778897_10788140_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10778897 - 10788140
Intron Length:
9244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCACTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCTTCTCACTC
Flanking Amino Acid:
KNPLAPPVQETQLIQMVIWM
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.7
0.67
0.8
73.3
31.2
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
47.9
-0.1
1.8
57.18
42.5

Associated Gene:

Gene:
NPRL3
Ensembl Gene ID:
ENSAPLG00000005274
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022913
10769965 - 10821551
51587
ENSAPLT00000005483
10770965 - 10818314
47350
ENSAPLT00000028304
10769965 - 10821551
51587