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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10788271_10789532_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10788271 - 10789532
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTTTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TAAAACTGACTT
Flanking Amino Acid:
YMLSPNASVCLYSPLADAFS
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
84.1
0.77
0.7
80.6
24.7
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
45
-0.3
1.8
61.19
42

Associated Gene:

Gene:
NPRL3
Ensembl Gene ID:
ENSAPLG00000005274
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028304
10769965 - 10821551
51587
ENSAPLT00000022913
10769965 - 10821551
51587
ENSAPLT00000005483
10770965 - 10818314
47350