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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10790253_10791010_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10790253 - 10791010
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TGCAGTTTACTG
Flanking Amino Acid:
EAIERSLKSIRPYHALLLLN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
92.2
0.95
0.6
88.3
21.3
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
42.4
-0.7
2
43.78
42.8

Associated Gene:

Gene:
NPRL3
Ensembl Gene ID:
ENSAPLG00000005274
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028304
10769965 - 10821551
51587
ENSAPLT00000022913
10769965 - 10821551
51587
ENSAPLT00000005483
10770965 - 10818314
47350