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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10791149_10799784_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10791149 - 10799784
Intron Length:
8636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCATTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATTT
Flanking Amino Acid:
LARDLKETYDSLCTTGVVRL
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
0.8
69.6
29.6
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
53.1
0.18
1.7
70.85
40.8

Associated Gene:

Gene:
NPRL3
Ensembl Gene ID:
ENSAPLG00000005274
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028304
10769965 - 10821551
51587
ENSAPLT00000022913
10769965 - 10821551
51587
ENSAPLT00000005483
10770965 - 10818314
47350