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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10807823_10811502_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10807823 - 10811502
Intron Length:
3680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TCTGCTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTGTAATAACT
Flanking Amino Acid:
CPLTDEQLVSGFSDVILATI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
70.4
0.46
1
67.7
38
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
51.1
0.11
2
76.25
40

Associated Gene:

Gene:
NPRL3
Ensembl Gene ID:
ENSAPLG00000005274
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028304
10769965 - 10821551
51587